This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001G6U6.1

Italy/LOC_001G6U6.1/2024
E. Pariani, A. Piralla, L. Pellegrinelli, F. Giardina, V. N. Porrello, G. Romano, C. Galli, L. Sandri, G. Ferrari, S. Binda, L. Vezzosi, G. Del Castillo, S. Buoro, D. Cereda & F. Baldanti

Fondazione IRCCS Policlinico San Matteo, Microbiology and Virology Department

Sample details

Collection date
2024
Earliest release date
2024-10-13
Sampling location
Italy
Isolate name
EV-D68/ITA/MI-4006/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 16:02insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-10-13
NCBI update date
2024-10-13
INSDC accession

Host

Host

Submission details

Submission ID
PQ426648.1
Submitting group
Date submitted
2026-02-27 16:01:59 UTC
Date released
2026-02-27 16:16:03 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
872
Total inserted nucs
6
Total deleted nucs
3
Total ambiguous nucs
5
Length
6527 (88.5%)
Variant
False

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • G756A
  • T768C
  • T780C
  • C801T
  • T807C
  • G834A
  • T837C
  • A846G
  • C855T
  • G861A
  • C867T
  • G876A
  • T879C
  • C891T
  • A915G
  • A927T
  • T942C
  • C948T
Deletions

2806-2808
Insertions

ins_3303:ATCCGG

Amino acid mutations

Mutations called relative to the AY426531.1 reference

Substitutions

2A

  • 2A:I22T
  • 2A:V37I
  • 2A:R67K
  • 2A:I71V
  • 2A:N136S
  • 2A:V144A

2B

  • 2B:N23S
  • 2B:I64V

2C

  • 2C:N30S
  • 2C:T34N
  • 2C:K58S
  • 2C:R72Q
  • 2C:R88K
  • 2C:V96M
  • 2C:S98A
  • 2C:A102T
  • 2C:I154V
  • 2C:N273D
  • 2C:T275A
  • 2C:V304I
  • 2C:T317I

3A

  • 3A:V12I
  • 3A:A13T
  • 3A:I68V

3B

  • 3B:P7S

3C

  • 3C:V30I
  • 3C:Y31H
  • 3C:R55K
  • 3C:C93Y

3D

  • 3D:N6S
  • 3D:M11V
  • 3D:V29I
  • 3D:V88T
  • 3D:N95S
  • 3D:E101D
  • 3D:R132K
  • 3D:K139R
  • 3D:I212V
  • 3D:I261V
  • 3D:V277I
  • 3D:I278V
  • 3D:K307R
  • 3D:H332Y
  • 3D:V349L
  • 3D:I360V

VP1

  • VP1:S1L
  • VP1:N2E
  • VP1:G6E
  • VP1:V13I
  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95G
  • VP1:A96E
  • VP1:G97R
  • VP1:T98I
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:M148T
  • VP1:K168E

VP2

  • VP2:S59A
  • VP2:R67K
  • VP2:S73A
  • VP2:N74E
  • VP2:T76K
  • VP2:D136N
  • VP2:R151E
  • VP2:I167L
  • VP2:V195A
  • VP2:M222V
  • VP2:V225M
  • VP2:T247A

VP3

  • VP3:I40V
  • VP3:M46V
  • VP3:D59E
  • VP3:N62D
  • VP3:E65Q
  • VP3:R68K
  • VP3:Q74L
  • VP3:A75T
  • VP3:L77V
  • VP3:I153V
  • VP3:I163V
  • VP3:S180N
  • VP3:S204N
  • VP3:D208N
  • VP3:I216V
Deletions

VP1

VP1:140
Insertions

VP1

ins_VP1:306:RL

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