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LOC_001FPFJ.1
Download
Download FASTA
Download metadata TSV
USA/LOC_001FPFJ.1/2022
T. Faleye,
J. Vargas,
B. Bermudez,
E. Driver,
R. Halden,
A. Varsani &
M. Scotch
Arizona State University, Center for Environmental Health Engineering
Sample details
Collection date
2022
Earliest release date
2023-12-26
Sampling location
USA
Isolate name
August2022_AZ-EV-A71-C1_N2M
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-12-26
NCBI update date
2023-12-26
INSDC accession
OR972579.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OR972579.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-24 13:49:31 UTC
Date released
2026-07-24 14:00:31 UTC
Clade
Clade EV-A71
C1-like
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
750
Total inserted nucs
5
Total deleted nucs
5
Length
3886 (52.5%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
T
568
C
G
579
A
T
580
C
A
581
T
T
582
G
A
604
C
A
642
G
G
645
A
A
648
T
A
663
G
T
666
C
C
667
T
C
669
A
A
678
G
C
685
T
C
686
T
T
689
A
C
690
T
Show more
Deletions
680, 681, 697, 711, 712
Insertions
ins_729:TGGAA
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
K
2
R
2A:
T
26
N
2A:
A
29
V
2A:
S
75
N
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
V
2A:
S
129
N
2B
2B:
S
3
T
2B:
R
11
D
2B:
T
15
V
2B:
N
30
S
2B:
I
93
V
2C
2C:
M
11
V
2C:
F
22
S
2C:
N
48
S
2C:
V
60
I
2C:
I
81
S
VP1
VP1:
K
18
R
VP1:
P
22
Q
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
240
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
I
262
V
VP1:
S
275
A
VP1:
D
282
N
VP2
VP2:
N
45
S
VP2:
P
94
Q
VP2:
N
143
D
VP2:
I
170
V
VP2:
M
198
I
VP2:
T
200
A
VP3
VP3:
M
100
L
VP3:
T
232
S
VP3:
E
237
Q
VP3:
A
239
G
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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