This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001FA6F.1

USA/LOC_001FA6F.1/2020
T. F. F. Ng, A. D. Frolov, C. J. Castro, S.-W. W. Chern, R. Selvarangan, A. Sasidharan, V. Avadhanula, K. Feliz, L. Maurer, L. Sahni, J. Boom, P. A. Piedra, M. Blair, L. J. Ezzell, N. B. Halasa, S. J. Hargrave, J. L. Luther, R. E. McHenry, C. Guevara Pulido, J. Chappell, L. Shelley, G. Weinberg, B. S. Rha, B. Clopper & C. Midgley

Centers for Disease Control and Prevention, Polio and Picornavirus Laboratory Branch

Sample details

Collection date
2020
Earliest release date
2023-07-24
Sampling location
USA
Isolate name
USA/2020-23459

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-07-24
NCBI update date
2023-07-24
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OR230421.1
Submitting group
Date submitted
2026-07-24 13:49:31 UTC
Date released
2026-07-24 14:00:31 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
916
Total inserted nucs
7
Total deleted nucs
26
Length
7348 (100%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions
  • T2G
  • T11C
  • C12T
  • T28C
  • C62T
  • A88T
  • T89C
  • C101T
  • T118C
  • C122T
  • C156T
  • T157C
  • T158C
  • A159G
  • C177T
  • T187C
  • C203T
  • T222C
Deletions
681-703, 2806-2808
Insertions
ins_26:C, ins_3303:ATCCGG

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

2A

  • 2A:I22T
  • 2A:V37I
  • 2A:R67K
  • 2A:I71V

2B

  • 2B:N23S
  • 2B:I64V

2C

  • 2C:N30S
  • 2C:T34N
  • 2C:K58S
  • 2C:R72Q
  • 2C:R88K
  • 2C:S98A
  • 2C:A102T
  • 2C:I154V
  • 2C:N273D
  • 2C:T275A
  • 2C:V304I
  • 2C:T317I

3A

  • 3A:V12I
  • 3A:I68V

3C

  • 3C:Y31H
  • 3C:R55K
  • 3C:C93Y

3D

  • 3D:M11V
  • 3D:V88T
  • 3D:N95S
  • 3D:E101D
  • 3D:R132K
  • 3D:K139R
  • 3D:I212V
  • 3D:V277I
  • 3D:I278V
  • 3D:K307R
  • 3D:V349L
  • 3D:I360V
  • 3D:P436S

VP1

  • VP1:S1L
  • VP1:N2E
  • VP1:G6E
  • VP1:V13I
  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95G
  • VP1:A96E
  • VP1:G97R
  • VP1:T98I
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:K168E
  • VP1:E169K

VP2

  • VP2:S59A
  • VP2:R67K
  • VP2:S73A
  • VP2:N74E
  • VP2:T76K
  • VP2:D136N
  • VP2:G142S
  • VP2:R151E
  • VP2:I167L
  • VP2:V195A
  • VP2:M222V
  • VP2:V225M
  • VP2:T247A

VP3

  • VP3:I40V
  • VP3:M46V
  • VP3:T58I
  • VP3:D59E
  • VP3:G60N
  • VP3:N62D
  • VP3:E65Q
  • VP3:R68K
  • VP3:Q74L
  • VP3:A75T
  • VP3:L77V
  • VP3:I153V
  • VP3:I163V
  • VP3:I166V
  • VP3:S180N
  • VP3:S204N
  • VP3:D208N
  • VP3:I216V
Deletions

VP1

VP1:140
Insertions

VP1

ins_VP1:306:RL

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