This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DUFH.1

Display Name: China/LOC_001DUFH.1/2022
Q. Xu

Sample details

Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2025-10-12
Collection country
China
Isolate name
2022CV16-HZ-80

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-21 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hangzhou Center for Disease Control and Prevention (Hangzhou Health Supervision Institution), Zhejiang Key Laboratory of Multi-Omics in Infection and Immunity

INSDC

NCBI release date
2025-10-12
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
7328
Total SNPs CV-A16
1553
Total inserted nucs CV-A16
18
Total deleted nucs CV-A16
27
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
98.97%

Submission details

Submission ID
PX448969.1.CV-A16
Submitting group
Date submitted
2025-10-21 15:26:46 UTC
Date released
2025-10-21 16:21:06 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A67C
  • T69C
  • C71T
  • A87G
  • G89T
  • T94C
  • A105C
  • T107C
  • C110T
  • C118T
  • A119T
  • A124G
  • T127A
  • C132A
  • C135T
  • G137A
  • T138A
  • C142T
    • Deletions
    101-103, 128-130, 583, 696, 716-724, 731, 732, 7332-7339
    Insertions
    ins_699:TTAAGGT, ins_739:TC, ins_7345:AGCTTAAAG

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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