This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DTHD.1

Display Name: China/LOC_001DTHD.1/2023
Q. Xu

Sample details

Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2025-10-12
Collection country
China
Isolate name
2023CV16-HZ-90

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-21 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hangzhou Center for Disease Control and Prevention (Hangzhou Health Supervision Institution), Zhejiang Key Laboratory of Multi-Omics in Infection and Immunity

INSDC

NCBI release date
2025-10-12
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
7358
Total SNPs CV-A16
1553
Total inserted nucs CV-A16
22
Total deleted nucs CV-A16
31
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
99.38%

Submission details

Submission ID
PX448937.1.CV-A16
Submitting group
Date submitted
2025-10-21 15:26:46 UTC
Date released
2025-10-21 16:21:06 UTC

Clade

Clade CV-A16
B1

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T41G
  • C47T
  • T54A
  • A58G
  • T60G
  • C61T
  • T62C
  • A67C
  • T69C
  • C71T
  • T88C
  • G89T
  • T94C
  • A101C
  • T107C
  • C110T
  • T112A
  • C118T
    • Deletions
    102-105, 130-132, 712-719, 722-727, 738, 739, 7331-7338
    Insertions
    ins_703:GTCATT, ins_748:TAGCGAG, ins_7345:AGCTTAAAG

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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