This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DQTW.1

USA/LOC_001DQTW.1/2007-08-06
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2007-08-06
Earliest release date
2016-08-02
Sampling location
USA (Orleans Co., NY)
Isolate name
WNV-1/Corvus brachyrhynchos/USA/07VER00993/2007

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:12insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547297.1
Submitting group
Date submitted
2026-06-12 21:12:14 UTC
Date released
2026-06-12 21:27:19 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
54
Total deleted nucs
3
Length
10784 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:Y68F
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:L244V
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V22A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C93T
  • G186A
  • C315T
  • C435T
  • T530C
  • T606C
  • A630G
  • A744G
  • C816T
  • T1442C
  • C1465T
  • G1815A
  • C1926T
  • C2011T
  • T2190C
  • T2394C
  • C2445T
  • C2466T
Deletions

10468-10470
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:Y68F

NS4B

  • NS4B:L244V

env

  • env:V159A
  • env:L167F

prM

  • prM:V22A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue