This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DMGN.1

Display Name: Russia/LOC_001DMGN.1/2024-09-18
O. Kanaeva, N. Romanenkova, V. Evseeva, N. Tolstykh, M. Blokhinova, K. Antonenkov, V. Sbarzaglia, N. Tsyganova & A. Khasanova

Sample details

Collection date
2024-09-18
Collection date (lower bound)
2024-09-18
Collection date (upper bound)
2024-09-18
Earliest release date
2025-09-28
Collection country
Russia
Collection subdivision level 1
Kostroma
Isolate name
SPb_11223/24EVI/Kostroma/2024/RU

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Pasteur Research Institute of Epidemiology and Microbiology, Saint Petersburg, Laboratory of Etiology and Control of Virus Infections

INSDC

NCBI release date
2025-09-28
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
705
Total SNPs EV-A71
121
Total inserted nucs EV-A71
0
Total deleted nucs EV-A71
0
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
9.52%

Submission details

Submission ID
PX360278.1.EV-A71
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:40:02 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2339C
  • T2342C
  • T2345A
  • C2348T
  • T2351C
  • G2360A
  • T2361C
  • G2363A
  • A2375G
  • G2378A
  • T2387C
  • A2406T
  • C2408T
  • C2414T
  • G2420A
  • G2421C
  • A2423G
  • G2426A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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