This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DMFQ.1

Display Name: Russia/LOC_001DMFQ.1/2024-08-21
O. Kanaeva, N. Romanenkova, V. Evseeva, N. Tolstykh, M. Blokhinova, K. Antonenkov, V. Sbarzaglia, N. Tsyganova & A. Khasanova

Sample details

Collection date
2024-08-21
Collection date (lower bound)
2024-08-21
Collection date (upper bound)
2024-08-21
Earliest release date
2025-09-28
Collection country
Russia
Collection subdivision level 1
Vologda
Isolate name
SPb_11178/24EVI/Vologda/2024/RU

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Pasteur Research Institute of Epidemiology and Microbiology, Saint Petersburg, Laboratory of Etiology and Control of Virus Infections

INSDC

NCBI release date
2025-09-28
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
726
Total SNPs CV-A16
180
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
0
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
9.79%

Submission details

Submission ID
PX360276.1.CV-A16
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:40:02 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A2187C
  • T2193C
  • C2199G
  • C2200T
  • C2202A
  • A2205G
  • C2208T
  • A2211T
  • C2214G
  • C2218T
  • A2220G
  • A2224G
  • A2235C
  • C2238T
  • C2247T
  • C2259T
  • C2262T
  • A2263C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue