This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DL0M.1

Display Name: China/LOC_001DL0M.1/2024-11
T. G. Lv & J. Chen

Sample details

Collection date
2024-11
Collection date (lower bound)
2024-11-01
Collection date (upper bound)
2024-11-30
Earliest release date
2025-05-14
Collection country
China
Isolate name
CVA16-linyi24232-SD-CHN-2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Linyi Maternal and Child Healthcare Hospital, Linyi Key Laboratory of Birth Defects

INSDC

NCBI release date
2025-05-14
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
7362
Total SNPs CV-A16
1544
Total inserted nucs CV-A16
21
Total deleted nucs CV-A16
26
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
99.38%

Submission details

Submission ID
PV613769.1.CV-A16
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:38:58 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C61T
  • C71T
  • T88C
  • G89A
  • T90A
  • T103G
  • C126A
  • T127A
  • T130C
  • T131G
  • G137A
  • T138G
  • T139C
  • C142T
  • A143G
  • G150A
  • A154G
  • C159T
    • Deletions
    128, 583, 702-705, 716-722, 734, 735, 3580-3582, 7332-7339
    Insertions
    ins_312:CC, ins_696:TTTTAAGGTT, ins_7345:AGTTTAAAG

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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