This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DDQD.1

Pakistan/LOC_001DDQD.1/2002
K. Kondiah, R. Swanepoel, J. T. Paweska, F. J. Burt & B. Ashkettle

NHLS/UFS, Medical Virology

Sample details

Collection date
2002
Earliest release date
2008-12-30
Sampling location
Pakistan
Isolate name
SPU 246/02/20

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession M

Host

Host

Submission details

Submission ID
FJ435408.1.M
Submitting group
Date submitted
2026-07-17 10:33:46 UTC
Date released
2026-07-17 10:35:49 UTC

Files

Annotations

Alignment and QC

Total SNPs M
104
Total inserted nucs M
1
Length M
412 (7.66%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • C4877T
  • T4880C
  • G4883A
  • C4886G
  • G4895A
  • C4899A
  • C4904T
  • C4907T
  • C4910T
  • A4911G
  • A4925T
  • A4952G
  • A4964G
  • T4967C
  • T4970C
  • G4988A
  • C4991T
  • T4997C
Deletions
N/A
Insertions

M

ins_5170:G

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M1597I
  • GPC:L1603I
  • GPC:I1607V
  • GPC:R1648K
  • GPC:K1652R
  • GPC:R1672K
  • GPC:T1681S
Deletions
N/A
Insertions
N/A

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