This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DCU6.1

Display Name: China/LOC_001DCU6.1/2024-12-24
Y. Gu & X. Zhang

Sample details

Collection date
2024-12-24
Collection date (lower bound)
2024-12-24
Collection date (upper bound)
2024-12-24
Earliest release date
2025-09-20
Collection country
China
Isolate name
CV-A10

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Pudong Center for Disease Control and Prevention, Microbiology Laboratory

INSDC

NCBI release date
2025-09-20
INSDC accession CV-A10

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A10

Length CV-A10
7385
Total SNPs CV-A10
1487
Total inserted nucs CV-A10
16
Total deleted nucs CV-A10
14
Total ambiguous nucs CV-A10
0
Total unknown nucs CV-A10
0
Total frame shifts CV-A10
0
Completeness CV-A10
99.65%

Submission details

Submission ID
PV254243.1.CV-A10
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:38:58 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Files

Annotations

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C21T
  • T28C
  • C38T
  • T56C
  • G58A
  • A60T
  • C62T
  • T64C
  • T67A
  • C69T
  • T71C
  • C90A
  • T96C
  • T102A
  • A106T
  • C108A
  • A109C
  • A118T
    • Deletions
    94, 308-310, 698-707
    Insertions
    ins_102:AAC, ins_127:ACT, ins_687:ATTGACA, ins_710:ATA

    Amino acid mutations

    Mutations called relative to the AY421767.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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