This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DBRD.1

Display Name: China/LOC_001DBRD.1/2024-04-28
H. Zeng

Sample details

Collection date
2024-04-28
Collection date (lower bound)
2024-04-28
Collection date (upper bound)
2024-04-28
Earliest release date
2025-07-20
Collection country
China
Isolate name
2024-EV-1007

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Guangdong Provincial Centre for Disease Control and Prevention, Institute of Pathogenic Microbiology

INSDC

NCBI release date
2025-07-20
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
891
Total SNPs CV-A16
207
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
10
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
12.15%

Submission details

Submission ID
PQ872700.1.CV-A16
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:38:25 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452T
  • G2453C
  • A2454C
  • C2463T
  • C2472T
  • G2476A
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • A2490G
  • T2493A
  • G2494A
  • G2495A
  • T2496C
    • Deletions
    3334-3343
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue