This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001D8HY.1

Display Name: France/LOC_001D8HY.1/2024-05-29
M. Bisseux, A. Mirand, J.-L. Bailly & C. Henquell

Sample details

Collection date
2024-05-29
Collection date (lower bound)
2024-05-29
Collection date (upper bound)
2024-05-29
Earliest release date
2025-06-01
Collection country
France
Isolate name
CVA16_240026992302_FRA24

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 16:37insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference des Enterovirus et Parechovirus, CHU Clermont-Ferrand, virologie

INSDC

NCBI release date
2025-06-01

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7401
Total SNPs
1526
Total inserted nucs
13
Total deleted nucs
17
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.89%

Submission details

Submission ID
PQ612458.1.CV-A16
Submitting group
Date submitted
2025-11-28 16:36:22 UTC
Date released
2025-11-28 17:34:51 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A22T
  • C36T
  • G44A
  • T54A
  • C61T
  • T62C
  • C71T
  • G89A
  • T90A
  • C96T
  • T103G
  • C126A
  • T127A
  • T130C
  • T131G
  • G137A
  • T138G
  • C142T
    • Deletions
    128, 583, 702-705, 715-719, 727-732
    Insertions
    ins_696:TTTCAAGGCT, ins_737:CC, ins_7341:C

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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