This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001D3CE.1

Display Name: France/LOC_001D3CE.1/2022-10-26
M. Bisseux, A. Mirand, C. Henquell, J.-L. Bailly, M. Jeannoel, I. Schuffenecker, Q. Semanas & A. Oblette

Sample details

Collection date
2022-10-26
Collection date (lower bound)
2022-10-26
Collection date (upper bound)
2022-10-26
Earliest release date
2025-07-12
Collection country
France
Isolate name
S2_023029037901_C1_PAR_FRA_26_10_2022

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:20insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference Enterovirus et Parechovirus - CHU Lyon, Hospices Civils de Lyon

INSDC

NCBI release date
2025-07-12
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
213
Total SNPs EV-A71
32
Total inserted nucs EV-A71
0
Total deleted nucs EV-A71
0
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
9
Total frame shifts EV-A71
0
Completeness EV-A71
2.75%

Submission details

Submission ID
PQ365652.1.EV-A71
Submitting group
Date submitted
2025-10-27 14:19:39 UTC
Date released
2025-10-27 15:10:55 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2642C
  • T2648C
  • C2651T
  • T2657C
  • A2669G
  • C2672T
  • T2678C
  • C2690T
  • A2696G
  • A2699G
  • C2702G
  • T2720C
  • T2723C
  • A2730G
  • C2738A
  • C2741A
  • T2744C
  • G2747A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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