This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001D3BG.1

Display Name: France/LOC_001D3BG.1/2023-03-22
M. Bisseux, A. Mirand, C. Henquell, J.-L. Bailly, M. Jeannoel, I. Schuffenecker, Q. Semanas & A. Oblette

Sample details

Collection date
2023-03-22
Collection date (lower bound)
2023-03-22
Collection date (upper bound)
2023-03-22
Earliest release date
2025-07-12
Collection country
France
Isolate name
S2_023049604701_C1_LYO_FRA_2280382023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:20insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference Enterovirus et Parechovirus - CHU Lyon, Hospices Civils de Lyon

INSDC

NCBI release date
2025-07-12
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
585
Total SNPs EV-A71
102
Total inserted nucs EV-A71
0
Total deleted nucs EV-A71
0
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
7.90%

Submission details

Submission ID
PQ365651.1.EV-A71
Submitting group
Date submitted
2025-10-27 14:19:39 UTC
Date released
2025-10-27 15:10:55 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2465A
  • T2471C
  • T2483C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
  • T2513A
  • C2519T
  • C2527A
  • A2528G
  • G2529A
  • C2531T
  • C2534G
  • G2540A
  • T2546C
  • T2549C
  • C2552A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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