This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001D0WE.1

Display Name: France/LOC_001D0WE.1/2024-06-20
M. Bisseux, A. Mirand, J.-L. Bailly & C. Henquell

Sample details

Collection date
2024-06-20
Collection date (lower bound)
2024-06-20
Collection date (upper bound)
2024-06-20
Earliest release date
2025-06-01
Collection country
France
Isolate name
EVA71_240029992801_FRA24

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference des Enterovirus et Parechovirus, CHU Clermont-Ferrand, virologie

INSDC

NCBI release date
2025-06-01
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
7400
Total SNPs EV-A71
1410
Total inserted nucs EV-A71
10
Total deleted nucs EV-A71
10
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
99.89%

Submission details

Submission ID
PQ612464.1.EV-A71
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:38:25 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T11C
  • G12T
  • T13G
  • G14T
  • T17G
  • G19T
  • T20G
  • T36C
  • T51C
  • A54T
  • G58A
  • A60T
  • T61C
  • T63A
  • T67A
  • C69T
  • A76G
  • C90A
    • Deletions
    308, 7332-7340
    Insertions
    ins_101:C, ins_128:CT, ins_7324:GAGGCCA

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue