This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001D0TL.1

Display Name: France/LOC_001D0TL.1/2024-05-28
M. Bisseux, A. Mirand, J.-L. Bailly & C. Henquell

Sample details

Collection date
2024-05-28
Collection date (lower bound)
2024-05-28
Collection date (upper bound)
2024-05-28
Earliest release date
2025-06-01
Collection country
France
Isolate name
CVA16_240027620602_FRA24

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference des Enterovirus et Parechovirus, CHU Clermont-Ferrand, virologie

INSDC

NCBI release date
2025-06-01
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
7401
Total SNPs CV-A16
1521
Total inserted nucs CV-A16
9
Total deleted nucs CV-A16
13
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
99.89%

Submission details

Submission ID
PQ612461.1.CV-A16
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:38:25 UTC

Clade

Clade CV-A16
B

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A22T
  • T60C
  • C61T
  • T62C
  • A63G
  • A67G
  • C71T
  • G89A
  • T90A
  • T94C
  • C97T
  • A102G
  • C104A
  • G106C
  • C118T
  • A119C
  • T120C
  • G122A
    • Deletions
    107, 131, 584, 704-707, 721, 722, 725-727, 7332
    Insertions
    ins_346:C, ins_696:T, ins_737:GCTTC, ins_7336:A, ins_7341:G

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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