This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001D0PU.1

Display Name: France/LOC_001D0PU.1/2024-04-30
M. Bisseux, A. Mirand, J.-L. Bailly & C. Henquell

Sample details

Collection date
2024-04-30
Collection date (lower bound)
2024-04-30
Collection date (upper bound)
2024-04-30
Earliest release date
2025-06-01
Collection country
France
Isolate name
CVA10_240022512202_FRA24

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference des Enterovirus et Parechovirus, CHU Clermont-Ferrand, virologie

INSDC

NCBI release date
2025-06-01
INSDC accession CV-A10

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A10

Length CV-A10
7398
Total SNPs CV-A10
1456
Total inserted nucs CV-A10
5
Total deleted nucs CV-A10
8
Total ambiguous nucs CV-A10
0
Total unknown nucs CV-A10
0
Total frame shifts CV-A10
0
Completeness CV-A10
99.89%

Submission details

Submission ID
PQ612457.1.CV-A10
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:38:25 UTC

Clade

Clade CV-A10
G/C

Genotype

Genotype
CV-A10

Files

Annotations

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C21T
  • A22G
  • T28C
  • C61A
  • C62T
  • G63A
  • T64C
  • G66T
  • T88C
  • A89C
  • C90T
  • C94T
  • T102A
  • A118T
  • C120A
  • C124A
  • T126C
  • G133A
    • Deletions
    103-105, 308-310, 7327, 7328
    Insertions
    ins_96:A, ins_109:CT, ins_127:T, ins_573:T

    Amino acid mutations

    Mutations called relative to the AY421767.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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