This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001CVFJ.1

Display Name: Singapore/LOC_001CVFJ.1/2008
Y. Wu, E. L. Tan, A. Yeo, K. P. Chan, H. Nishimura, M. J. Cardosa, C. L. Poh, S. H. Quak, V. T. Chow, E. Tan, C. Chan, M. Cardosa, C. Poh, S. Quak & V. Chow

Sample details

Collection date
2008
Collection date (lower bound)
2008-01-01
Collection date (upper bound)
2008-12-31
Earliest release date
2010-09-28
Collection country
Singapore
Isolate name
2909/Sin/2008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:46insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Singapore University, Microbiology

INSDC

NCBI release date
2010-09-28
NCBI update date
2016-07-25
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
891
Total SNPs
162
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
12.03%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
HQ285105.1
Submitting group
Date submitted
2025-12-05 17:46:11 UTC
Date released
2025-12-05 18:12:20 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • A2447G
  • T2462C
  • T2480C
  • A2491G
  • C2495G
  • C2503G
  • A2504G
  • T2507C
  • T2508C
  • A2510G
  • T2513A
  • C2525T
  • C2527A
  • G2529A
  • C2534A
  • A2537G
  • T2546C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145G
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
    • Deletions
    None
    Insertions
    None

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