This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001CSFM.1

Display Name: Taiwan/LOC_001CSFM.1/1998-06
H. Y. Wang, K. C. Tsao, C. H. Hsieh, L. M. Huang, T. Y. Lin, G. W. Chen, S. R. Shih, L. Y. Chang & L.-Y. Chang

Sample details

Collection date
1998-06
Collection date (lower bound)
1998-06-01
Collection date (upper bound)
1998-06-30
Earliest release date
2010-12-11
Collection country
Taiwan
Isolate name
TW-2051-98

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:46insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Taiwan University and Hospital, Department of Pediatrics

INSDC

NCBI release date
2010-12-11
NCBI update date
2016-07-25
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
2735
Total SNPs
685
Total inserted nucs
112
Total deleted nucs
1538
Total ambiguous nucs
0
Total unknown nucs
236
Total frame shifts
5
Frame shifts
[{'cdsName': 'VP3', 'nucRel': {'begin': 82, 'end': 249}, 'nucAbs': [{'begin': 1794, 'end': 1961}], 'codon': {'begin': 28, 'end': 83}, 'gapsLeading': {'begin': 26, 'end': 28}, 'gapsTrailing': {'begin': 83, 'end': 83}}, {'cdsName': 'VP3', 'nucRel': {'begin': 291, 'end': 365}, 'nucAbs': [{'begin': 1997, 'end': 2069}], 'codon': {'begin': 95, 'end': 119}, 'gapsLeading': {'begin': 95,...
Completeness
52.98%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
HQ283808.1
Submitting group
Date submitted
2025-12-05 17:46:11 UTC
Date released
2025-12-05 18:13:24 UTC

Clade

Clade EV-A71
A

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G1776C
  • C1779G
  • A1784G
  • T1786C
  • G1787T
  • C1788T
  • C1789G
  • C1797A
  • C1799G
  • C1801A
  • A1803T
  • C1804T
  • C1811T
  • A1812T
  • T1814C
  • A1816C
  • A1818G
  • T1819G
    • Deletions
    1791-1794, 1806-1808, 2070, 2148-2153, 2202-2212, 2235, 2283-2285, 2730, 3879-5386
    Insertions
    ins_1961:CACT, ins_1997:GG, ins_2042:GG, ins_2090:CG, ins_2447:GG, ins_3293:CCGACCGGCACTAGTCGTACTGCCATTACTACCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    2A

  • 2A:T26N
  • 2A:N57D
  • 2A:R68K
  • 2A:V82I
  • 2A:F83Y
  • 2A:E102A
  • 2A:S129N

    • 3C

  • 3C:A18V
  • 3C:I36V
  • 3C:I54V
  • 3C:N55K
  • 3C:V56I
  • 3C:L57V
  • 3C:K88R
  • 3C:C89F
  • 3C:V93T
  • 3C:T95S
  • 3C:G96P
  • 3C:I109M
  • 3C:P144A
  • 3C:S153A
  • 3C:I157V
  • 3C:A169G
  • 3C:G173A
  • 3C:S177G
  • 3C:A180C

    • VP3

  • VP3:R87T
  • VP3:D89I
  • VP3:G91T
  • VP3:R92G
  • VP3:G94R
  • VP3:P95G
  • VP3:M126S
  • VP3:V168F
  • VP3:I169L
  • VP3:P170Y
  • VP3:I172L
  • VP3:S173L
  • VP3:N174M
    • Deletions
    VP3:120, VP3:164-167, VP3:175
    Insertions
    ins_VP1:1:EIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

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