This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001CLEV.1

Display Name: Hungary/LOC_001CLEV.1/2024-03-26
N. Deezsi-Magyar, B. Novak, G. Zsidei & K. Szomor

Sample details

Collection date
2024-03-26
Collection date (lower bound)
2024-03-26
Collection date (upper bound)
2024-03-26
Earliest release date
2024-06-18
Collection country
Hungary
Isolate name
2442_2024_AFP case

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Center for Public Health and Pharmacy, Department of Microbiological Reference Laboratories

INSDC

NCBI release date
2024-06-18
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens
Is lab host
True

Alignment and QC metrics EV-A71

Length EV-A71
7396
Total SNPs EV-A71
1435
Total inserted nucs EV-A71
2
Total deleted nucs EV-A71
5
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
99.88%

Submission details

Submission ID
PP858877.1.EV-A71
Submitting group
Date submitted
2025-10-13 08:44:32 UTC
Date released
2025-10-13 09:37:17 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G12T
  • T13G
  • G14T
  • T17G
  • G19T
  • T20G
  • C21T
  • A30G
  • T36C
  • T51C
  • A54T
  • G58A
  • A60T
  • T61C
  • T63A
  • T67A
  • C69T
  • A76G
    • Deletions
    98-100, 7339, 7340
    Insertions
    ins_128:CT

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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