This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001B6F9.1

China/LOC_001B6F9.1/2015
J. J. Tang, Z. Z. Ding & F. Fan

Yunnan Center for Disease Control and Prevention, Institute for Immunization Program

Sample details

Collection date
2015
Earliest release date
2021-05-12
Sampling location
China
Isolate name
239/YN/2015AFP/

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-05-12
NCBI update date
2021-05-12
INSDC accession

Host

Host

Submission details

Submission ID
MT258862.1
Submitting group
Date submitted
2026-07-22 16:53:09 UTC
Date released
2026-07-22 17:02:41 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
172
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • G2441A
  • C2444T
  • A2447G
  • G2465A
  • C2468T
  • T2471C
  • T2483C
  • T2489C
  • A2491G
  • G2492A
  • C2498T
  • C2501T
  • C2503A
  • A2504C
  • T2508C
  • T2513A
  • A2516G
  • C2525T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22H
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:S283T
  • VP1:T289A
  • VP1:A293S
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue