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LOC_001B5RP.1
Download
Download FASTA
Download metadata TSV
Italy/LOC_001B5RP.1/2022
F. A. M. Giardina,
G. Romano,
G. Ferrari,
L. Pellegrinelli,
A. Seiti,
C. Galli,
E. Pariani,
A. Piralla &
F. Baldanti
Fondazione IRCCS Policlinico San Matteo, Microbiology and Virology Department
Sample details
Collection date
2022
Earliest release date
2024-10-13
Sampling location
Italy
Isolate name
ITA/MI-6880/2022
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-05 16:08
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-10-13
NCBI update date
2024-10-13
INSDC accession
PQ415039.1
Host
Host
Homo sapiens
Submission details
Submission ID
PQ415039.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-05 16:08:27 UTC
Date released
2026-03-05 16:24:00 UTC
Clade
Clade EV-D68
B3
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
840
Length
6518 (88.5%)
Variant
False
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
741
C
A
744
G
T
747
C
A
765
C
T
771
C
G
774
A
T
780
C
C
783
T
A
784
G
T
789
C
C
801
T
T
804
C
T
807
C
T
825
C
C
831
T
A
864
G
C
867
T
T
879
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
37
I
2A:
R
65
K
2A:
N
84
S
2A:
A
99
V
2A:
V
144
A
2B
2B:
I
64
V
2C
2C:
R
41
K
2C:
K
58
N
2C:
R
72
Q
2C:
S
98
A
2C:
A
102
M
2C:
N
273
G
2C:
T
275
A
2C:
T
277
V
2C:
V
304
I
3A
3A:
A
13
T
3A:
V
53
L
3C
3C:
I
46
T
3C:
N
50
D
3C:
C
93
Y
3D
3D:
N
6
S
3D:
M
11
V
3D:
S
41
P
3D:
T
59
I
3D:
N
95
S
3D:
E
101
D
3D:
Q
130
H
3D:
T
200
I
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
I
360
V
VP1
VP1:
S
1
I
VP1:
N
2
D
VP1:
V
13
I
VP1:
G
76
S
VP1:
K
84
R
VP1:
N
90
D
VP1:
A
92
T
VP1:
S
95
T
VP1:
G
97
Q
VP1:
H
99
D
VP1:
K
110
R
VP1:
N
142
S
VP1:
D
144
S
VP1:
S
145
N
VP1:
M
148
V
VP1:
K
168
E
VP1:
E
169
K
VP1:
N
218
T
Show more
VP2
VP2:
S
59
A
VP2:
S
73
A
VP2:
N
74
T
VP2:
Y
98
H
VP2:
D
136
N
VP2:
N
144
D
VP2:
R
151
A
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
V
225
M
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
S
VP3:
N
62
V
VP3:
R
68
K
VP3:
V
73
A
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
S
180
N
VP4
VP4:
I
18
V
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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