This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001B4FB.1

USA/LOC_001B4FB.1/2004-08-26
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2004-08-26
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/bird/Sacramento-CA-USA/2004-08-26/W0786

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Submission details

Submission ID
OQ721178.1
Submitting group
Date submitted
2026-10-05 17:01:18 UTC
Date released
2026-10-05 17:14:24 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
36
Total unknown nucs
643
Length
10302 (87.6%)
Amino Acid Mutations from founder clade
  • 2K:V9M
  • 2K:L15M
  • NS1:K110N
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4A:F92L
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • C810T
  • T1442C
  • C1465T
  • A2799T
  • T2943C
  • C4107T
  • A4146G
  • C4272T
  • T4341C
  • T4542C
  • C5238T
  • G5280A
  • C5391T
  • G5421A
  • C5886T
  • C6138T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:V9M

NS1

  • NS1:K110N

NS4A

  • NS4A:F92L

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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