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LOC_001AXDQ.1
Download
Download FASTA
Download metadata TSV
USA/LOC_001AXDQ.1/2013
A. Addetia,
Q. Phung &
A. L. Greninger
University of Washington, UW Virology
Sample details
Collection date
2013
Earliest release date
2020-01-20
Sampling location
USA
Isolate name
10S5
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2020-01-20
NCBI update date
2020-01-20
INSDC accession
MN749161.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MN749161.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-22 16:53:09 UTC
Date released
2026-07-22 17:02:41 UTC
Clade
Clade EV-A71
C2
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
1462
Total inserted nucs
5
Total deleted nucs
5
Length
7408 (100%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
C
10
G
G
12
A
T
13
C
G
15
T
T
17
C
G
19
T
T
20
G
T
36
C
C
38
T
T
51
C
A
54
T
T
61
C
C
62
T
T
63
A
C
64
A
A
76
G
A
89
T
C
94
T
Show more
Deletions
105, 106, 127, 128, 707
Insertions
ins_123:CC, ins_701:T, ins_739:TC
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
R
68
M
2A:
V
82
I
2A:
E
102
V
2A:
S
129
N
2A:
L
131
M
2A:
E
145
D
2B
2B:
R
11
D
2B:
T
15
M
2B:
I
83
V
2C
2C:
M
11
A
2C:
N
13
S
2C:
F
22
S
2C:
I
37
V
2C:
K
41
R
2C:
V
60
I
2C:
I
81
S
2C:
A
103
T
2C:
R
151
H
2C:
V
171
I
2C:
A
173
T
2C:
V
200
I
2C:
Y
243
F
2C:
D
257
E
2C:
K
268
R
2C:
T
271
S
2C:
V
303
L
3A
3A:
E
39
D
3A:
I
44
V
3A:
E
46
D
3A:
T
47
S
3A:
N
56
S
3A:
V
61
I
3A:
I
65
V
3B
3B:
P
9
Q
3B:
I
10
T
3C
3C:
A
18
V
3C:
R
33
H
3C:
I
36
V
3C:
I
54
V
3C:
N
55
K
3C:
V
56
I
3C:
L
57
V
3C:
K
88
R
3C:
C
89
F
3C:
V
93
T
3C:
T
95
S
3C:
G
96
P
3C:
I
109
M
3C:
P
144
A
3C:
S
153
A
3C:
I
157
V
3C:
A
169
G
3C:
G
173
A
3C:
S
177
G
3C:
A
180
C
3D
3D:
R
10
K
3D:
N
37
T
3D:
V
42
A
3D:
Y
73
F
3D:
T
75
K
3D:
Q
76
E
3D:
N
91
K
3D:
S
93
T
3D:
E
99
D
3D:
Y
106
N
3D:
V
134
T
3D:
T
138
V
3D:
R
140
K
3D:
L
143
F
3D:
N
154
Y
3D:
S
163
R
3D:
S
164
A
3D:
L
165
I
Show more
VP1
VP1:
K
18
R
VP1:
P
22
R
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
240
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
S
275
A
VP1:
D
282
N
VP1:
T
289
A
VP2
VP2:
N
45
S
VP2:
P
94
Q
VP2:
N
143
D
VP2:
M
198
I
VP2:
T
200
A
VP2:
F
224
Y
VP3
VP3:
D
93
S
VP3:
M
100
L
VP3:
T
232
A
VP3:
E
237
Q
VP3:
A
239
G
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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