This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AF9E.1

Malaysia/LOC_001AF9E.1/2006
S. N. Amrun, J. J. Tan, N. Y. Rickett, J. A. Cox, B. Lee, M. J. Griffiths, T. Solomon, D. Perera, M. H. Ooi, J. A. Hiscox, L. F. Ng, J. J. L. Tan & L. F. P. Ng

Agency for Science, Technology and Research (A*STAR), Singapore Immunology Network (SIgN)

Sample details

Collection date
2006
Earliest release date
2020-01-22
Sampling location
Malaysia
Isolate name
6-1500-4

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:42insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2020-01-22
NCBI update date
2020-01-22
INSDC accession

Host

Host

Submission details

Submission ID
MN053431.1
Submitting group
Date submitted
2026-05-09 06:42:20 UTC
Date released
2026-05-09 07:08:44 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
1456
Total inserted nucs
7
Total deleted nucs
3
Length
7412 (100%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • C28T
  • G35A
  • T36C
  • T41G
  • G42T
  • C45T
  • T51C
  • A54T
  • T67A
  • A76G
  • T88C
  • A89G
  • T99C
  • G100A
  • C120T
  • G121T
  • A124C
  • C126A
Deletions

20, 60, 693
Insertions

ins_10:C, ins_63:A, ins_128:CT, ins_703:G, ins_739:TC

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

2A

  • 2A:T26N
  • 2A:N57D
  • 2A:R68K
  • 2A:F83Y
  • 2A:S87G
  • 2A:E102A
  • 2A:S129N

2B

  • 2B:R11D
  • 2B:K29R
  • 2B:E36D
  • 2B:K41R
  • 2B:V47I
  • 2B:S85A
  • 2B:M95I

2C

  • 2C:N13S
  • 2C:F22S
  • 2C:K33R
  • 2C:I37V
  • 2C:K41R
  • 2C:V44A
  • 2C:N48T
  • 2C:V60I
  • 2C:S61T
  • 2C:I81S
  • 2C:A103V
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T271S
  • 2C:N316S

3B

  • 3B:P9Q
  • 3B:I10V

3C

  • 3C:A18V
  • 3C:I36V
  • 3C:S41A
  • 3C:I54V
  • 3C:V60I
  • 3C:T79I
  • 3C:C89F
  • 3C:V93T
  • 3C:T95S
  • 3C:I109M
  • 3C:P144A
  • 3C:I157V
  • 3C:A169G
  • 3C:E182V

3D

  • 3D:M6V
  • 3D:R10K
  • 3D:T66V
  • 3D:Y106N
  • 3D:H113C
  • 3D:T138V
  • 3D:R140K
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R
  • 3D:R169K
  • 3D:E172K
  • 3D:P184S
  • 3D:P187L
  • 3D:L189M
  • 3D:L251V
  • 3D:S259P
  • 3D:K323N

VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145Q
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:S275A
  • VP1:D282N

VP2

  • VP2:N45D
  • VP2:P94Q
  • VP2:V126I
  • VP2:N143D

VP3

  • VP3:L6P
  • VP3:D234H
  • VP3:E237Q
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue