This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0018G2X.1

Display Name: China/LOC_0018G2X.1
Z. Sun

Sample details

Collection date (upper bound)
2021-11-17
Earliest release date
2021-11-17
Collection country
China
Isolate name
SD2018-YT105-CVA16-VP1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-15 12:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yantai Center for Disease Control and Prevention, Microbiological Laboratory

INSDC

NCBI release date
2021-11-17
NCBI update date
2021-11-17
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
891
Total SNPs
215
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.02%
Total stop codons
0

Submission details

Submission ID
MT863555.1
Submitting group
Date submitted
2025-12-15 11:59:58 UTC
Date released
2025-12-15 12:13:12 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448A
  • T2451C
  • G2452C
  • G2453C
  • A2454C
  • C2463T
  • G2475A
  • G2476A
  • C2481G
  • C2483A
  • T2484C
  • T2485A
  • C2486G
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:L23M
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:T103I
  • VP1:M119L
  • VP1:A139V
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue