This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0018G01.1

Display Name: China/LOC_0018G01.1/2012-11-01
M. Chen, S. He, Q. Yan, J. Zhang, C. Li, X. Su, S. Zhang, T. Li, S. Ge & N. Xia

Sample details

Collection date
2012-11-01
Collection date (lower bound)
2012-11-01
Collection date (upper bound)
2012-11-01
Earliest release date
2021-01-12
Collection country
China
Isolate name
2012-354-5UTR

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-15 12:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Xiamen University, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health

INSDC

NCBI release date
2021-01-12
NCBI update date
2021-01-12
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
295
Total SNPs
23
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
3.98%
Total stop codons
0

Submission details

Submission ID
MT861082.1
Submitting group
Date submitted
2025-12-15 11:59:58 UTC
Date released
2025-12-15 12:13:12 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G208T
  • T217C
  • A228G
  • C232T
  • C238T
  • G259A
  • T262C
  • A267G
  • G278A
  • T279C
  • A297C
  • G298A
  • C303T
  • C333T
  • T337A
  • G358A
  • A409G
  • C410T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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