This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0018734.1

Display Name: China/LOC_0018734.1/2018
H. Yu & Y. Zhou

Sample details

Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Earliest release date
2021-10-12
Collection country
China
Isolate name
2257Y1EV-A71

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-15 12:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Fudan University, School of Public Health, Key Laboratory of Public Health Safety, Ministry of Education

INSDC

NCBI release date
2021-10-12
NCBI update date
2021-10-12
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
971
Total SNPs
182
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
13.11%
Total stop codons
0

Submission details

Submission ID
MT710386.1
Submitting group
Date submitted
2025-12-15 11:59:58 UTC
Date released
2025-12-15 12:13:12 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • C2428G
  • T2432C
  • T2435C
  • A2438G
  • G2441A
  • C2444T
  • A2447G
  • G2459A
  • T2462A
  • G2465A
  • T2471C
  • T2480C
  • T2483C
  • T2489C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22H
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A

    • VP3

  • VP3:A239G
    • Deletions
    None
    Insertions
    None

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