This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011GAV.1

France/LOC_0011GAV.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
3445

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:01insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession S

Submission details

Submission ID
PV976886.1.S
Submitting group
Date submitted
2026-03-23 16:01:28 UTC
Date released
2026-03-23 16:09:42 UTC

Host

Host

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
141
Total inserted nucs S
8
Total deleted nucs S
15
Total unknown nucs S
627
Total frame shifts S
3
Frame shifts S
NP:31-93(nt:146-334),NP:168-230(nt:557-744),NP:252-483(nt:808-1504)
Length S
1531 (54.5%)
Stop codons S
NP:135,NP:156
Total stop codons S
2
Variant S
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C166T
  • C187T
  • G189A
  • T199C
  • G202A
  • A209G
  • T220C
  • T223C
  • C235T
  • C241T
  • A243C
  • C244A
  • G245T
  • C246G
  • A247T
  • T250C
  • G262A
  • G271A
Deletions

S

483-485, 584-586, 665, 745, 803-807, 857, 858
Insertions

S

ins_145:C, ins_247:CGC, ins_334:CC, ins_556:A, ins_567:G

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:L26D
  • NP:V27T
  • NP:D28F
  • NP:E94K
  • NP:W95R
  • NP:T124A
  • NP:G125N
  • NP:K135*
  • NP:A143D
  • NP:Y156*
  • NP:E161D
  • NP:K237S
  • NP:A239Q
  • NP:E240G
  • NP:T241D
  • NP:E242R
  • NP:G243R
  • NP:G245V
  • NP:I246L
Deletions

NP

NP:144, NP:250, NP:251
Insertions
N/A

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