This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011G9X.1

France/LOC_0011G9X.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
3424

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:01insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession S

Submission details

Submission ID
PV976885.1.S
Submitting group
Date submitted
2026-03-23 16:01:28 UTC
Date released
2026-03-23 16:09:42 UTC

Host

Host

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
170
Total inserted nucs S
2
Total unknown nucs S
250
Total frame shifts S
1
Frame shifts S
NP:419-483(nt:1310-1504)
Length S
1547 (77.5%)
Variant S
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T132C
  • A150T
  • T155C
  • C166T
  • C178A
  • G189A
  • G190A
  • T199C
  • G202A
  • A209G
  • G221C
  • G224C
  • G233C
  • C235T
  • A239G
  • C241T
  • C244T
  • A247G
Deletions
N/A
Insertions

S

ins_1309:G, ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:L26P
  • NP:N32I
  • NP:Y34H
  • NP:R45K
  • NP:S52G
  • NP:D56H
  • NP:A57P
  • NP:D60H
  • NP:I62V
  • NP:K91R
  • NP:E94Q
  • NP:G101A
  • NP:E112Q
  • NP:E121Q
  • NP:T124A
  • NP:G125N
  • NP:D136H
  • NP:E161Q
Deletions
N/A
Insertions
N/A

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