This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011G8Z.1

France/LOC_0011G8Z.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
590

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:01insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession M
INSDC accession S

Submission details

Submission ID
PV976884.1.M/PV976887.1.S
Submitting group
Date submitted
2026-03-23 16:01:28 UTC
Date released
2026-03-23 16:09:42 UTC

Host

Host

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
127
Total inserted nucs S
1
Length S
1673 (100%)
Variant S
True
Total SNPs M
640
Total inserted nucs M
98
Total deleted nucs M
55
Total unknown nucs M
3191
Total frame shifts M
7
Frame shifts M
GPC:18-74(nt:144-314),GPC:95-122(nt:374-456),GPC:318-326(nt:1043-1070),GPC:352-524(nt:1146-1664),GPC:543-560(nt:1718-1771),GPC:1084-1148(nt:3340-3535),GPC:1162-1685(nt:3574-5147)
Length M
5206 (36.7%)
Variant M
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • G50T
  • A51G
  • A52T
  • G53A
  • G56T
  • A57G
  • T58A
  • T59A
  • G60A
  • A64G
  • T65A
  • C66T
  • A69G
  • A70T
  • T71G
  • T72A
  • C74G
  • G76A

S

  • G20T
  • A50G
  • G54A
  • G67A
  • G99A
  • A124G
  • C166T
  • C178A
  • G189A
  • T199C
  • G202A
  • A209G
  • C235T
  • C241T
  • C244T
  • A247G
  • G271A
  • C295T
Deletions

M

315, 316, 346-373, 1029-1042, 1144, 1145, 1515, 1665, 1716, 1717, 1772, 3536, 3537, 3573, 3674
Insertions

M

ins_143:GCGGGGTTGCCAGT, ins_456:GCTCCAGGTGCATCCACTCCAAGCAACACCACATCAAACAAACCAGATGTCAACTCATTCACAT, ins_1070:AC, ins_1295:A, ins_3339:G, ins_3383:T, ins_5084:TTGATG, ins_5108:G, ins_5145:GACGAATC

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M1K
  • GPC:H2F
  • GPC:I3M
  • GPC:S4L
  • GPC:M6T
  • GPC:Y7N
  • GPC:A8F
  • GPC:I9F
  • GPC:L10F
  • GPC:L12Q
  • GPC:Q13L
  • GPC:L14Y
  • GPC:C15G
  • GPC:G16V
  • GPC:L17A
  • GPC:P80I
  • GPC:P81S
  • GPC:I82T

NP

  • NP:R15K
  • NP:R45K
  • NP:S52G
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:S301G
  • NP:K428R
  • NP:V436I
Deletions

GPC

GPC:75, GPC:86-94, GPC:313-317, GPC:327, GPC:328, GPC:525, GPC:528, GPC:542, GPC:1149, GPC:1161
Insertions

GPC

ins_GPC:131:DVNSFTSPILEAKSSP, ins_GPC:1157:EEWX

Report an issue with this sequence or metadata

Create GitHub issue