This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011FKB.1

Tajikistan/LOC_0011FKB.1/2023-05-07
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-07
Earliest release date
2025-06-15
Sampling location
Tajikistan
Isolate name
CCHFV_24_24

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:01insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-06-15
INSDC accession L
INSDC accession S

Submission details

Submission ID
PV738567.1.L/PV738566.1.S
Submitting group
Date submitted
2026-03-23 16:01:28 UTC
Date released
2026-03-23 16:09:42 UTC

Host

Host

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs S
112
Total ambiguous nucs S
5
Length S
926 (55.1%)
Variant S
False
Total SNPs L
998
Total ambiguous nucs L
21
Total unknown nucs L
3640
Length L
11435 (64.2%)
Variant L
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T466C
  • G472A
  • C475T
  • G490A
  • T493C
  • G502A
  • T508A
  • A526G
  • T535C
  • G538T
  • C541T
  • T550G
  • G553A
  • A563G
  • A565T
  • A571G
  • G578A
  • G583A

S

  • G429A
  • A439G
  • C445T
  • T446C
  • G448C
  • A460G
  • C484A
  • C487T
  • A490G
  • T496C
  • C497T
  • G499A
  • A503C
  • A520G
  • G538A
  • G544A
  • G559A
  • C571T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:G259E
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:N419S

RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:T200A
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:V407A
  • RdRp:T481A
  • RdRp:K486R
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508I
  • RdRp:V515I
  • RdRp:K940R
Deletions
N/A
Insertions
N/A

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