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LOC_000YNXL.1
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Display Name: France/LOC_000YNXL.1/2024
M. Gasparine &
A. Falchi
Sample details
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
ECH
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-22 14:40
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Corsica, Unite des Virus Emergents
INSDC
NCBI release date
2025-08-10
INSDC accession L
PV976880.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
11837
Total SNPs L
837
Total inserted nucs L
0
Total deleted nucs L
1
Total ambiguous nucs L
0
Total unknown nucs L
914
Total frame shifts L
1
Frame shifts L
RdRp:1028-3946(nt:3157-11914)
Completeness L
90.22%
Submission details
Submission ID
PV976880.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-22 14:40:13 UTC
Date released
2025-10-22 14:46:33 UTC
Files
Annotations
LOC_000YNXL.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
93
A
L:
T
106
C
L:
C
117
T
L:
G
119
C
L:
A
123
G
L:
A
126
G
L:
G
130
C
L:
T
151
C
L:
C
153
G
L:
T
254
A
L:
C
256
T
L:
A
257
C
L:
G
272
A
L:
T
292
C
L:
A
298
G
L:
C
313
T
L:
A
314
G
L:
G
323
A
Show more
Deletions
L:3156
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
RdRp
RdRp:
S
6
N
RdRp:
A
14
V
RdRp:
G
15
R
RdRp:
Q
16
R
RdRp:
Y
17
C
RdRp:
S
26
C
RdRp:
Y
60
N
RdRp:
I
61
L
RdRp:
E
66
K
RdRp:
R
80
G
RdRp:
G
83
S
RdRp:
L
103
I
RdRp:
S
106
F
RdRp:
T
115
A
RdRp:
I
116
V
RdRp:
I
118
Y
RdRp:
E
128
G
RdRp:
F
133
L
Show more
Deletions
None
Insertions
None
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