This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000YMCS.1

Display Name: Cameroon/LOC_000YMCS.1/2024-07
M. Gasparine

Sample details

Collection date
2024-07
Collection date (lower bound)
2024-07-01
Collection date (upper bound)
2024-07-31
Earliest release date
2025-03-11
Collection country
Cameroon
Isolate name
Akonolinga

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-22 14:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-03-11
INSDC accession L

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics L

Length L
173
Total SNPs L
8
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
1.43%

Submission details

Submission ID
PV112929.1.L
Submitting group
Date submitted
2025-10-22 14:40:13 UTC
Date released
2025-10-22 14:46:33 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C9612T
  • L:C9619A
  • L:C9622T
  • L:A9641C
  • L:C9649T
  • L:T9655G
  • L:C9664T
  • L:G9764A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:T3179I
  • RdRp:K3189Q
  • RdRp:V3230I
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue