This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000YKP5.1

Display Name: Portugal/LOC_000YKP5.1/2024
L. Ze-Ze, C. Nunes, M. Sousa, R. de Sousa, C. Gomes, A. S. Santos, R. T. Alexandre, F. Amaro, T. Loza, M. Blanco & M. J. Alves

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-15
Earliest release date
2024-12-15
Collection country
Portugal
Isolate name
PTHuCCHFV79532_INSA2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-22 14:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute of Health Dr. Ricardo Jorge P.I. (INSA), Center for Vectors and Infectious Disease Research (CEVDI)

INSDC

NCBI release date
2024-12-15
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
122
Total SNPs S
7
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
7.30%

Submission details

Submission ID
PQ200212.1.S
Submitting group
Date submitted
2025-10-22 14:40:13 UTC
Date released
2025-10-22 14:46:33 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G47C
  • S:A50G
  • S:G54A
  • S:G67A
  • S:G99A
  • S:G100A
  • S:A121G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
    • Deletions
    None
    Insertions
    None

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