This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000YHGN.1

Display Name: Indonesia/LOC_000YHGN.1/2023-02-21
M.-S. Rieu, S.-R. Ji, H.-R. Byun, S.-W. Han, C.-Y. Choi, H.-Y. Nam, S.-G. Seo & J.-S. Chae

Sample details

Collection date
2023-02-21
Collection date (lower bound)
2023-02-21
Collection date (upper bound)
2023-02-21
Earliest release date
2024-08-15
Collection country
Indonesia
Isolate name
IN12T3

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-22 14:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Seoul National University, Labaratory of Veterinary Internal Medicine

INSDC

NCBI release date
2024-08-15
INSDC accession S

Host

Host taxon id
Host name scientific
Bos taurus

Alignment and QC metrics S

Length S
260
Total SNPs S
40
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
15.55%

Submission details

Submission ID
PP334108.1.S
Submitting group
Date submitted
2025-10-22 14:40:13 UTC
Date released
2025-10-22 14:46:33 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G292A
  • S:C295T
  • S:C310T
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
  • S:A349G
  • S:G353T
  • S:T364C
  • S:G367A
  • S:C370T
  • S:A379G
  • S:G381A
  • S:T382C
  • S:A386G
  • S:A394G
  • S:C400T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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