This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000XSCP.1

China/LOC_000XSCP.1/2009
F. Yang, Y. Hu, J. Du & T. Zhang

Institute of Pathogen Biology, Chinese Academy of Medical Sciences, State Key Laboratory for Molecular Virology and Genetic Engineering

Sample details

Collection date
2009
Earliest release date
2011-07-31
Sampling location
China
Isolate name
SHZH2009-120

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-13 15:42insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-07-31
NCBI update date
2011-12-08
INSDC accession

Host

Host

Submission details

Submission ID
HM459808.1
Submitting group
Date submitted
2026-03-13 15:42:14 UTC
Date released
2026-03-13 15:47:08 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
67
Length
304 (4.1%)
Variant
False

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C2604G
  • C2607G
  • T2610G
  • A2619T
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • T2631C
  • T2634C
  • A2637T
  • A2640G
  • C2643T
  • C2644A
  • G2646A
  • T2670G
  • A2673G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue