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LOC_000TJ6H.1
Download
Download FASTA
Download metadata TSV
Slovenia/2024-NGS-4369/2026-09-01
S. Zakotnik,
N. Knap,
R. Kogoj &
M. Korva
University of Ljubljana, Faculty of Medicine, Institute of Microbiology and Immunology, Laboratory for Diagnostics of Zoonoses and WHO Centre
Sample details
Collection date
2026-09
Earliest release date
2026-10-27
Sampling location
Slovenia
Isolate name
2024-NGS-4369
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-10-27
NCBI update date
2026-10-27
INSDC accession
QB060989.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
QB060989.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-04 12:15:09 UTC
Date released
2026-11-04 12:32:46 UTC
Lineage
Lineage
2
Files
Annotations
LOC_000TJ6H.1.embl
Alignment and QC
Total SNPs
1903
Total inserted nucs
46
Total deleted nucs
18
Total unknown nucs
1071
Length
10258 (83%)
Amino Acid Mutations from founder clade
NS1:
K
44
R
NS1:
I
245
V
NS2B:
M
88
I
NS2B:
V
119
I
NS3:
P
10
L
NS3:
K
11
R
NS3:
V
221
I
NS3:
H
249
P
NS3:
T
479
P
NS4B:
S
14
G
NS4B:
V
23
T
NS4B:
-
28
L
NS4B:
-
29
G
NS4B:
-
30
V
NS4B:
T
48
A
NS5:
K
190
R
NS5:
A
538
S
env:
K
71
R
env:
K
399
R
env:
V
488
I
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
762
T
C
771
T
T
774
A
A
777
G
G
780
C
G
789
A
G
792
A
A
799
T
C
810
A
G
813
A
A
819
G
G
822
A
T
826
C
A
831
G
A
834
G
C
849
A
T
850
C
G
855
A
Show more
Deletions
6994-6996, 10630, 10658, 10664, 10711-10713, 10752, 10794-10797, 10908-10910, 10967
Insertions
ins_7006:TTGAGA, ins_10408:TGTATTGAGT, ins_10417:GTTG, ins_10422:TTTATG, ins_10592:AC, ins_10613:C, ins_10651:G, ins_10699:N, ins_10773:AGA, ins_10782:GAAC, ins_10829:AC, ins_10845:A, ins_10848:G, ins_10941:AT, ins_10971:AT
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
S
9
G
NS1:
Y
34
F
NS1:
K
44
R
NS1:
K
51
A
NS1:
V
71
I
NS1:
E
94
N
NS1:
S
99
A
NS1:
T
105
A
NS1:
I
113
M
NS1:
L
123
I
NS1:
V
135
I
NS1:
K
141
E
NS1:
Q
146
A
NS1:
L
153
M
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
NS1:
L
192
M
Show more
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
I
124
V
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
Show more
NS2B
NS2B:
A
41
V
NS2B:
S
61
T
NS2B:
M
88
I
NS2B:
V
103
A
NS2B:
V
119
I
NS2B:
V
120
I
NS3
NS3:
P
10
L
NS3:
K
11
R
NS3:
Q
92
H
NS3:
F
130
Y
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
203
K
NS3:
R
215
K
NS3:
V
221
I
NS3:
A
233
S
NS3:
N
253
S
NS3:
V
283
I
NS3:
S
302
A
NS3:
S
331
A
NS3:
L
336
M
NS3:
S
347
T
NS3:
T
356
V
NS3:
V
384
I
Show more
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
S
14
G
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
V
23
T
NS4B:
K
24
R
NS4B:
N
26
T
NS4B:
F
27
T
NS4B:
S
28
L
NS4B:
M
29
G
NS4B:
G
30
V
NS4B:
T
48
A
NS5
NS5:
Q
18
H
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
K
190
R
NS5:
L
197
T
NS5:
R
224
H
NS5:
V
229
I
NS5:
R
247
K
NS5:
Y
254
F
NS5:
R
287
K
Show more
env
env:
E
55
D
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
T
env:
L
167
F
env:
A
172
S
env:
N
199
S
env:
T
205
S
env:
T
208
A
env:
T
210
S
env:
V
232
T
Show more
prM
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
N/A
Insertions
NS4B
ins_NS4B:31:N
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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