This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000TAX8.1

Slovakia/LOC_000TAX8.1/2024-08-01
S. Pivka, K. Loziakova Penazziova, Z. Pacanska & T. Csank

University of Veterinary Medicine and Pharmacy in Kosice, Department of Microbiology and Immunology

Sample details

Collection date
2024-08
Earliest release date
2026-04-18
Sampling location
Slovakia (Komarno, Velky Lel)
Isolate name
734.C/2024/Velky Lel-KN/SVK

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-04-18
NCBI update date
2026-04-18
INSDC accession

Host

Host

Submission details

Submission ID
PX917339.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:58:44 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
278
Length
1358 (12.3%)
Amino Acid Mutations from founder clade
  • NS5:K190R
  • NS5:A298T
  • NS5:R403G
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C8106A
  • C8109G
  • T8112C
  • C8121T
  • C8130A
  • T8142C
  • T8148A
  • G8154A
  • T8157C
  • A8158C
  • G8160C
  • G8163C
  • A8164G
  • T8166C
  • G8169T
  • C8173T
  • T8175G
  • A8178G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:I162V
  • NS5:R177K
  • NS5:V181I
  • NS5:K190R
  • NS5:L197T
  • NS5:R224H
  • NS5:V229I
  • NS5:R247K
  • NS5:Y254F
  • NS5:R287K
  • NS5:R288K
  • NS5:H296Q
  • NS5:E298T
  • NS5:D312E
  • NS5:E390D
  • NS5:R392K
  • NS5:R403G
  • NS5:R422K
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue