This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000T5NX.1

Germany/CHVir-BE23-M1327-2/2023-08-22
C. Patzina-Mehling, A. Kopp, Y. S. Lee, M. X. L. Birkl, S. Ebers, K. Voigt, S. L. Graff, U. Beisel, C. Landgraf, F. Ganz, A. Planillo, S. Kramer-Schadt, S. Junglen & Y.-S. Lee

Charite - Universitaetsmedizin Berlin, Institute for Virology

Sample details

Collection date
2023-08-22
Earliest release date
2026-04-20
Sampling location
Germany (Berlin)
Isolate name
CHVir-BE23-M1327-2

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-04-20
NCBI update date
2026-07-13
INSDC accession

Host

Host

Submission details

Submission ID
PX620722.1
Submitting group
Date submitted
2026-07-20 09:55:47 UTC
Date released
2026-07-20 10:16:43 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
133
Length
586 (5.31%)
Amino Acid Mutations from founder clade
  • NS5:L16F
  • NS5:K190R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C7726T
  • G7734C
  • A7740G
  • A7743G
  • G7749A
  • C7752T
  • T7755C
  • G7758A
  • C7762A
  • C7764A
  • G7770A
  • T7778C
  • C7779T
  • T7788C
  • A7794C
  • C7806T
  • A7814G
  • A7815G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:L16F
  • NS5:Q18H
  • NS5:I33T
  • NS5:K45R
  • NS5:V49I
  • NS5:I78V
  • NS5:R101K
  • NS5:C139A
  • NS5:C140S
  • NS5:I162V
  • NS5:R177K
  • NS5:V181I
  • NS5:K190R
  • NS5:L197T
Deletions
N/A
Insertions
N/A

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