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LOC_000T4YC.1
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Download FASTA
Download metadata TSV
Taiwan/LOC_000T4YC.1/1998-06
H. Y. Wang,
K. C. Tsao,
C. H. Hsieh,
L. M. Huang,
T. Y. Lin,
G. W. Chen,
S. R. Shih,
L. Y. Chang &
L.-Y. Chang
National Taiwan University and Hospital, Department of Pediatrics
Sample details
Collection date
1998-06
Earliest release date
2010-12-11
Sampling location
Taiwan
Isolate name
TW-1944-98
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2010-12-11
NCBI update date
2016-07-25
INSDC accession
HQ283804.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
HQ283804.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-20 10:39:16 UTC
Date released
2026-07-20 10:42:17 UTC
Clade
Clade EV-A71
C2
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
658
Total inserted nucs
105
Total deleted nucs
1564
Total unknown nucs
227
Total frame shifts
5
Frame shifts
VP3:42-46(nt:1836-1850),VP3:73-126(nt:1927-2090),VP3:132-137(nt:2104-2123),VP3:168-174(nt:2213-2234),VP1:289-297(nt:3303-3329)
Length
2737 (53.6%)
Stop codons
VP3:62,VP3:143,VP3:191
Total stop codons
3
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
T
1742
C
A
1744
G
G
1748
T
T
1749
A
T
1750
C
A
1754
G
C
1756
T
C
1759
A
G
1761
C
T
1763
C
G
1764
T
A
1765
T
T
1766
C
G
1767
T
G
1770
T
G
1772
C
T
1773
C
A
1775
C
Show more
Deletions
1788-1790, 1851-1855, 1926, 1959-1961, 1992-1994, 2016-2036, 2070, 2103, 2148-2153, 2202-2212, 2235, 3882-5389
Insertions
ins_1835:CC, ins_2090:CG, ins_2123:A, ins_3302:GCCAGTCGCACAGCAATTACCACTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
R
68
M
2A:
V
82
I
2A:
E
102
V
2A:
S
129
N
2A:
E
145
D
3C
3C:
A
18
V
3C:
I
36
V
3C:
I
54
V
3C:
N
55
K
3C:
V
56
I
3C:
L
57
V
3C:
K
88
R
3C:
C
89
F
3C:
V
93
T
3C:
T
95
S
3C:
G
96
P
3C:
I
109
M
3C:
P
144
A
3C:
S
153
A
3C:
I
157
V
3C:
A
169
G
3C:
G
173
A
3C:
S
177
G
3C:
A
180
C
VP1
VP1:
K
18
R
VP1:
P
22
R
VP1:
P
30
Q
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
240
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
S
275
A
VP1:
D
282
N
VP3
VP3:
A
22
S
VP3:
P
23
H
VP3:
I
24
T
VP3:
P
26
I
VP3:
N
27
K
VP3:
F
28
H
VP3:
H
29
F
VP3:
P
30
C
VP3:
T
31
F
VP3:
C
33
G
VP3:
I
34
L
VP3:
H
35
S
VP3:
P
37
N
VP3:
G
38
R
VP3:
E
39
L
VP3:
V
40
L
VP3:
R
41
A
VP3:
E
50
T
Show more
Deletions
VP3
VP3:47, VP3:48, VP3:72, VP3:131, VP3:144, VP3:145, VP3:149-160, VP3:164-167, VP3:175
Insertions
VP1
ins_VP1:297:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
VP3
ins_VP3:71:T, ins_VP3:194:WP, ins_VP3:205:YWFCS
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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