This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000T4H8.1

Germany/CHVir-BE23-M1379-1/2023-08-21
C. Patzina-Mehling, A. Kopp, Y.-S. Lee, S. Ebers, K. Voigt, S. L. Graff, U. Beisel, A. Planillo, S. Kramer-Schadt & S. Junglen

Charite - Universitaetsmedizin Berlin, Institute for Virology

Sample details

Collection date
2023-08-21
Earliest release date
2026-04-20
Sampling location
Germany (Berlin)
Isolate name
CHVir-BE23-M1379-1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-04-20
NCBI update date
2026-04-20
INSDC accession

Host

Host

Submission details

Submission ID
PX620723.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:58:44 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
122
Total deleted nucs
132
Length
604 (6.67%)
Amino Acid Mutations from founder clade
  • NS1:K44R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A2234C
  • C2370T
  • C2385A
  • T2394C
  • T2400C
  • C2406A
  • A2409T
  • T2412C
  • C2413A
  • C2415G
  • C2424T
  • A2427G
  • C2440T
  • C2451T
  • C2454G
  • G2457C
  • G2463C
  • C2466T
Deletions

2236-2367
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:S9G
  • NS1:Y34F
  • NS1:K44R
  • NS1:K51A
  • NS1:V71I
  • NS1:E94N
  • NS1:S99A
  • NS1:T105A
  • NS1:I113M
  • NS1:L123I
  • NS1:V135I
  • NS1:K141E
  • NS1:Q146A
  • NS1:L153M

env

  • env:L483M
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue