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LOC_000T4BM.1
Download
Download FASTA
Download metadata TSV
Armenia/LOC_000T4BM.1/2022
A. Zhirova,
Y. Lisitskaya,
A. Volynkina,
A. Manucharyan &
G. Melik-Andreasyan
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections
Sample details
Collection date
2022
Earliest release date
2025-03-02
Sampling location
Armenia
Isolate name
375-ARM-TI-2022
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-03-02
INSDC accession L segment
PQ878924.1
INSDC accession M segment
PQ878915.1
Host
Host
ticks (Ixodoidea)
Submission details
Submission ID
PQ878924.1.L/PQ878915.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-07 12:00:27 UTC
Date released
2026-08-07 12:04:51 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Files
Annotations
LOC_000T4BM.1.embl
Alignment and QC
Total SNPs L segment
81
Length L segment
437 (3.61%)
Total SNPs M segment
110
Length M segment
435 (8.05%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OR047158.1
references
Substitutions
L segment
A
124
G
A
126
T
T
131
A
C
133
T
A
135
G
T
139
G
T
154
C
T
160
C
T
163
C
G
166
A
G
172
T
G
175
A
G
190
T
C
199
T
T
214
A
G
217
A
T
218
C
C
223
T
Show more
M segment
T
4684
C
A
4693
T
C
4705
T
C
4708
T
A
4709
G
T
4714
C
C
4717
T
C
4719
G
A
4723
G
A
4725
G
C
4726
T
T
4732
A
C
4733
T
A
4734
T
G
4738
A
T
4744
A
A
4745
G
C
4747
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
OR047158.1
references
Substitutions
GPC
GPC:
S
1545
G
GPC:
T
1548
S
GPC:
D
1550
G
GPC:
Q
1553
L
GPC:
N
1557
D
GPC:
T
1558
A
GPC:
H
1562
K
GPC:
S
1583
A
GPC:
R
1585
K
GPC:
S
1587
N
GPC:
F
1590
L
GPC:
E
1591
D
GPC:
V
1593
F
GPC:
V
1611
I
GPC:
F
1612
I
GPC:
F
1616
L
GPC:
A
1623
L
GPC:
V
1626
L
Show more
RdRp
RdRp:
Y
17
F
RdRp:
S
19
T
RdRp:
N
20
S
RdRp:
K
53
E
RdRp:
H
56
R
RdRp:
S
57
T
RdRp:
Y
58
E
RdRp:
Y
60
H
RdRp:
S
67
V
RdRp:
Y
72
F
RdRp:
Q
74
L
RdRp:
R
80
K
RdRp:
S
85
D
RdRp:
L
90
I
RdRp:
L
94
M
RdRp:
G
113
N
RdRp:
I
114
V
RdRp:
D
135
E
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
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