This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000T37W.1

USA/132WG-CA05LA/2005-10-04
O. G. Pybus, M. A. Suchard, P. Lemey, F. J. Bernardin, A. Rambaut, F. W. Crawford, R. R. Gray, N. Arinaminpathy, S. L. Stramer, M. P. Busch, E. L. Delwart, F. Bernardin, S. Stramer, S. Caglioti & E. Delwart

Blood Systems Research Institute and University of California, San Francisco

Sample details

Collection date
2005-10-04
Earliest release date
2010-09-22
Sampling location
USA
Isolate name
132WG-CA05LA

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-09-22
NCBI update date
2012-09-17
INSDC accession

Host

Host

Submission details

Submission ID
GQ507480.1
Submitting group
Date submitted
2026-08-26 20:01:00 UTC
Date released
2026-08-26 20:03:50 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
53
Total ambiguous nucs
1
Length
10825 (98.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:L104F
  • NS2B:I35V
  • NS2B:E67K
  • NS2B:A103V
  • NS3:K11R
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS4B:I21L
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:T332S
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • A1320G
  • T1442C
  • C1465T
  • T1939C
  • A1960T
  • C1974T
  • C2466T
  • C2779T
  • T3399C
  • T3525C
  • G3909A
  • T3927C
  • C4107T
  • A4146G
  • A4321G
  • T4341C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:L104F

NS2B

  • NS2B:I35V
  • NS2B:E67K

NS3

  • NS3:K11R

NS4A

  • NS4A:A85T

NS4B

  • NS4B:I21L

NS5

  • NS5:K314R

env

  • env:V159A
  • env:L167F
  • env:T332S
Deletions
N/A
Insertions
N/A

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