This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000T2SS.1

USA/008E-3485772TX05EP/2005-09-01
F. Bernardin, S. Stramer, S. Caglioti, M. P. Busch & E. Delwart

Blood Systems Research Institute and University of California, San Francisco

Sample details

Collection date
2005-09-01
Earliest release date
2010-09-21
Sampling location
USA (zip code 79936)
Isolate name
008E-3485772TX05EP

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-09-21
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
GQ502442.1
Submitting group
Date submitted
2026-08-26 20:01:00 UTC
Date released
2026-08-26 20:03:50 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
9
Total ambiguous nucs
1
Length
1418 (12.8%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
  • env:A344V
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T1014C
  • C1329T
  • T1442C
  • C1465T
  • C1878T
  • C1997T
  • C2080T
  • T2190C
  • C2319T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
  • env:A344V
Deletions
N/A
Insertions
N/A

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