This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDTF.1

Spain/LOC_000SDTF.1/2016-10-27
M. P. Sanchez-Seco, M. J. Sierra, A. Estrada-Pe, F. Valcarcel, R. Molina, E. R. de Arellano, A. S. Olmeda, L. G. San Miguel, M. Jimenez, L. J. Romero, A. Negredo & A. A. Negredo

National Center of Microbiology, Institute of Health Carlos III, Arbovirus and Imported Viral diseases

Sample details

Collection date
2016-10-27
Earliest release date
2023-02-13
Sampling location
Spain
Isolate name
Caceres_1521_2016

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-02-13
INSDC accession S

Submission details

Submission ID
OK082061.1.S
Submitting group
Date submitted
2026-02-27 15:36:32 UTC
Date released
2026-02-27 15:42:53 UTC

Host

Host

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
82
Length S
591 (35.3%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C166T
  • G169A
  • G171A
  • C178A
  • T182C
  • G189A
  • G190A
  • T199C
  • C208T
  • C217T
  • G229A
  • C235T
  • C244T
  • T253A
  • G262A
  • A268C
  • G271A
  • T274C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:S39N
  • NP:R45K
  • NP:T102A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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