This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDTF.1

China/LOC_000SDTF.1/1968
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1968
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA68038

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 01:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047174.1.L/OR047154.1.M/OR047134.1.S
Submitting group
Date submitted
2026-02-21 01:07:16 UTC
Date released
2026-02-21 01:14:19 UTC

Host

Host

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs M
588
Total inserted nucs M
1
Total deleted nucs M
11
Length M
5356 (100%)
Total SNPs L
1614
Total inserted nucs L
275
Length L
12371 (99.9%)
Total SNPs S
216
Total inserted nucs S
138
Length S
1700 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • A14G
  • C18T
  • C20G
  • G23T
  • A35G
  • G43C
  • T49C
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71T
  • G88A
  • G93A
  • A109G
  • A124G
  • T125C

    • M

  • T1G
  • C2A
  • C4A
  • A5T
  • A6C
  • A7T
  • G8T
  • T68C
  • G76A
  • A80G
  • C85T
  • A88G
  • C92T
  • A107G
  • A112G
  • A117G
  • C119T
  • C126T

    • S

  • T1A
  • A5T
  • A7C
  • G8A
  • A9C
  • A11C
  • C12G
  • C14G
  • G15T
  • G17T
  • G20T
  • T22C
  • T23C
  • C25G
  • C28T
  • A30T
  • T37C
  • C38T
    • Deletions

    M

    5289-5299
    Insertions

    L

    ins_20:TCTGATCTCGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATG, ins_58:T, ins_11925:GT, ins_12054:TACAGTTCT, ins_12083:GCTTT, ins_12108:TTCATTATTTCCAGCCTTCCGTACGCCACATGTCCCACGCCGCGACGCGCGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTATGTGTGTATTTTTTATTTCAATTTGGTTTGCATTCCAAAGAAAGTCATAAGTATATTCCCATTTCTATAAAAAGTATTGTAAAATTATTTAAAAA

    M

    ins_5168:G

    S

    ins_0:ATAGGACACCCTGGATCAGAAAGCAAGGACACGTAGACAGCAGTGGCACAGAAGCAGAGGACACAGCCCCAGGAGTCAGTGGTACGAGCAGACAGA, ins_30:ACACTGTATTGCAAGGCCATTTCTGATCTAATTTTCTAGTT, ins_1530:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:H24S
  • GPC:R28E
  • GPC:D33N
  • GPC:T34V
  • GPC:M35V
  • GPC:D40N
  • GPC:P42Q
  • GPC:S44P
  • GPC:P47L
  • GPC:A51T
  • GPC:S53P
  • GPC:I54V
  • GPC:P58S
  • GPC:P63S
  • GPC:L70P

    • NP

  • NP:R15K
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:Y17H
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163V
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    N/A
    Insertions
    N/A

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