This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDG4.1

USA/LOC_000SDG4.1/unknown
C. T. Davis, L. Li, F. J. May, R. Jr. Bueno, J. A. Dennett, A. A. Bala, H. Guzman, D. Quiroga-Elizondo, R. B. Tesh, A. D. Barrett, T. Davis & D. Elizonda-Quiroga

University of Texas Medical Branch, Pathology

Sample details

Earliest release date
2007-04-03
Sampling location
USA
Isolate name
Bird 5058

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-15 16:20insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2007-04-03
NCBI update date
2016-07-14
INSDC accession

Host

Host

Submission details

Submission ID
EF205429.1
Submitting group
Date submitted
2026-05-15 16:19:59 UTC
Date released
2026-05-15 16:25:52 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
8
Total deleted nucs
5138
Length
2004 (64.8%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • A957G
  • C1170T
  • T1442C
  • C1465T
  • C2181T
  • T2280A
Deletions

2464-7601
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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