This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SD8L.1

Display Name: USA/LOC_000SD8L.1
C. M. Perez-Velez, M. S. Anderson, C. Robinson, E. J. McFarland, W. A. Nix, M. A. Pallansch, M. S. Oberste & M. P. Glode

Sample details

Collection date (upper bound)
2006-07-01
Earliest release date
2006-07-01
Collection country
USA
Isolate name
USA/TX2003-10700

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Respiratory and Enteric Viruses Branch, Picornavirus Section

INSDC

NCBI release date
2006-07-01
INSDC accession EV-A71

Alignment and QC metrics EV-A71

Length EV-A71
282
Total SNPs EV-A71
44
Total inserted nucs EV-A71
0
Total deleted nucs EV-A71
1
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
1
Frame shifts EV-A71
VP1:151-297(nt:2887-3329)
Completeness EV-A71
3.82%

Submission details

Submission ID
DQ421834.1.EV-A71
Submitting group
Date submitted
2025-10-27 14:18:47 UTC
Date released
2025-10-27 14:24:56 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2636G
  • G2639A
  • C2651T
  • A2669G
  • C2675T
  • T2684C
  • C2702A
  • G2711A
  • G2714A
  • T2720C
  • T2723C
  • A2729T
  • A2730G
  • G2732A
  • C2738A
  • T2744C
  • C2750T
  • G2753A
    • Deletions
    2886
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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