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LOC_000SBEA.1
Download
Download FASTA
Download metadata TSV
India/LOC_000SBEA.1/2019
P. Yadav,
A. Shete-Aich,
D. Nyayanit &
R. Sahay
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Amreli)
Isolate name
MCL-19-H-3232
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-09 12:54
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-08-07
INSDC accession L
MW298536.1
INSDC accession M
MW298544.1
Submission details
Submission ID
MW298536.1.L/MW298544.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-09 12:54:28 UTC
Date released
2026-03-09 12:59:30 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_000SBEA.1.embl
Alignment and QC
Total SNPs L
1620
Total inserted nucs L
33
Total deleted nucs L
21
Length L
12119 (100%)
Variant L
True
Total SNPs M
678
Total inserted nucs M
1
Length M
5337 (99.4%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
10
C
G
23
C
A
35
G
G
43
C
C
48
T
T
49
C
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
Show more
M
G
55
A
A
57
G
G
76
A
C
85
T
T
86
C
A
101
G
A
107
G
A
117
G
C
119
T
C
120
T
T
122
C
C
126
T
A
128
G
G
143
A
A
146
G
G
147
A
G
149
A
T
152
C
Show more
Deletions
L
11967-11985, 12076, 12077
Insertions
L
ins_25:T, ins_66:CC, ins_11931:AT, ins_12053:CTACAATTCTCTCAACC, ins_12108:TTTATTAATTC
M
ins_5169:G
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
M
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
E
26
G
GPC:
R
28
G
GPC:
T
34
V
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
S
53
P
GPC:
I
54
F
GPC:
L
56
P
GPC:
P
66
L
GPC:
G
69
I
GPC:
V
76
P
GPC:
I
82
A
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
V
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
V
214
I
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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